PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G373500.1
Common NameB456_007G373500
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB_related
Protein Properties Length: 516aa    MW: 58538.2 Da    PI: 8.0096
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G373500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.8e-09352399448
                         S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
     Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                         WT  E  +lvd+++++G g+W+ I + +    + Rt+ +++++w+++l
  Gorai.007G373500.1 352 WTLMEVIKLVDGIAKYGVGRWTNIKKLLFassTYRTPVDLRDKWRNLL 399
                         **********************************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-12344403IPR009057Homeodomain-like
PROSITE profilePS5129412.824344403IPR017930Myb domain
SuperFamilySSF466895.91E-15346409IPR009057Homeodomain-like
SMARTSM007171.6E-9348401IPR001005SANT/Myb domain
CDDcd116601.94E-16350400No hitNo description
PfamPF002496.9E-7351399IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
METDRKSHSM KKLDDVKCQR VDQPVVPGLD DEVTEVEHLL AEPKIEHVSA DGILCFGNEN  60
IEKHLKMEDF SCAFDYGWKI SSGGLDSIHG RGGDDLKLEV LDGLLDEVDE VDDIDAAHDL  120
SGACEDFLLD IEFPEKLSEL DCGPREGSTL CNSSSESHSP GFSGRSNSVS GISESSIATV  180
RESNSENGGL GKRVGCNLRH NFRRKHGCQG PVMDVGRSSI EHVQDLDESD DDEKPLVSLI  240
LSNQKVKSSV KVTKGDTLLR QKRLRKPTRR YIEEFSRNST MEESKSHKIQ PQEEFPQVPS  300
ESQPRRGCPK KIVLKSELES DYELSASESE DGRKRTKRSK TACDRRKHQK MWTLMEVIKL  360
VDGIAKYGVG RWTNIKKLLF ASSTYRTPVD LRDKWRNLLR SSSVQENNRR ELNPNVHCRL  420
RIIRSMPYVP YQSPWYVASV NWQPFIHTRR FHLSIMFLRP NNRQLKALRF TTVHETYVGS  480
KRSLKKAFCV NSSLACNSPF NTDLHILMLF KSLGN*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012435185.10.0PREDICTED: uncharacterized protein LOC105761804
TrEMBLA0A0D2SWV60.0A0A0D2SWV6_G
STRINGVIT_08s0040g01640.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92001927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-21TRF-like 6
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]